Category archive for science

• Multiscale bootstrap clustering with Python and R
• Akademy: my own BoF
• DataMatrix 0.8 is finally out
• Gene search applet: suggestions and code review needed
• Moving on
• Science and KDE: kile
• Science and KDE: rkward
• Published! (and it matters more)
• DataMatrix 0.7 has been released
• The plague of cross-database annotations
• DataMatrix 0.5
• data.frames in Python - DataMatrix
• Commercial applications, public funding
• FOSS and research
• Performance and R
• Follow up on meta-analysis
• Meta analysis difficulty increasing
• Ph.D.!
• Brain drain
• Gene identifiers
• Data clustering with Python
• Buggy bioinformatics software
• Thesis completed
• SOFT file woes
• Easy RMA: RMAExpress
• The tower of Babel of bioinformatics
• New office
• Science and Microsoft Word
• Full speed ahead
• Publish or perish
• Data handling
• More meta-analysis difficulty
• Thesis work and wikis
• Databases
• Python usefulness
• Bioinformatics != sequence analysis
• GenBUGG
• A BED file builder
• Old code
• Deadlines and domains
• A lot of work
• Two days in Firenze
• A day with an Apple Xserve
• Working with Genome Browser data
• Probably useless, but...
• A simple annotator
• Random photos
• More studying
• The joy of meta-analysis
• PhD students
• Software and biology
• Text files with Python
• My first real Python program
• Annotations and Linux
• I'm back
• Computational Biology... biology?
• Perspectives
• The power of the shell
• Upgrade
• Busy busy busy!
• Classes and meetings
• Biological software and HIG
• Stress
• Security breach
• Continuous analysis
• Outage
• Windows and Missions
• Mixed entry (yet again)
• Bertinoro - Day 4
• Bertinoro - Day 3
• Bertinoro - Arrival & Day 1
• Random entry
• Trento, March 7th-8th
• Bertinoro di Romagna
• Woes of a scientist
• All-in-one entry
• Clarissa's birthday
• Badly written software, or policy?
• Office, take 2
• Moved
• Always needed
• Moving? Not yet